Ex) Article Title, Author, Keywords
Current Optics
and Photonics
Ex) Article Title, Author, Keywords
Curr. Opt. Photon. 2023; 7(1): 73-82
Published online February 25, 2023 https://doi.org/10.3807/COPP.2023.7.1.73
Copyright © Optical Society of Korea.
Hyun-Ji Lee1,2, Sang-Won Lee1,2
Corresponding author: *swlee76@kriss.re.kr, ORCID 0000-0001-6952-6957
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
In this study, we demonstrate ultrahigh-resolution spectral-domain optical coherence tomography with a 200-kHz line rate using a superluminescent diode with a−3-dB bandwidth of 100 nm at 849 nm. To increase the line rate, a subset of the total number of camera pixels is used. In addition, a partial-spectrum detection method is used to obtain OCT images within an imaging depth of 2.1 mm while maintaining ultrahigh axial resolution. The partially detected spectrum has a flat-topped intensity profile, and side lobes occur after fast Fourier transformation. Consequently, we propose and apply the super-Gaussian window function as a new window function, to reduce the side lobes and obtain a result that is close to that of the axial-resolution condition with no window function applied. Upon application of the super-Gaussian window function, the result is close to the ultrahigh axial resolution of 4.2 μm in air, corresponding to 3.1 μm in tissue (n = 1.35).
Keywords: Spectral domain, Super-Gaussian window, Ultrahigh resolution optical coherence tomography
OCIS codes: (110.4500) Optical coherence tomography; (170.3880) Medical and biological imaging; (170.4500) Optical coherence tomography
Optical coherence tomography (OCT) has been extensively studied as a clinical and noninvasive imaging tool for biological tissues, because it provides high-resolution cross-sectional and three-dimensional volumetric images [1, 2]. Many OCT study groups have spent significant effort on trying to obtain higher axial resolutions, higher sensitivities, and increased acquisition speeds in various fields, including medical application studies [3–13]. Ultrahigh-resolution OCT (UHR-OCT) with an axial resolution of 3 μm or less can yield clear visualization of microstructured layers in tissues, close to the level of histology. The higher acquisition speed can minimize motion artifacts and facilitate quantitative analysis of three- and four-dimensional image data. Recently, Fourier-domain OCT (FD-OCT)—one type based on a wavelength-swept source (SS-OCT), and another on a spectral domain (SD-OCT)—has been actively used in high-sensitivity and high-acquisition-speed applications [9–11]. SS-OCT can provide an increased imaging depth of over 5 mm and a lower sensitivity roll-off. The acquisition speed of SS-OCT has increased substantially to line rates of a few hundred kilohertz and even up to a few megahertz, since wavelength-swept sources based on Fourier-domain mode locking (FDML) and high-speed polygon scanners were introduced [12–15]. A wavelength-swept source with 100–200 kHz line rate has recently been commercialized [2]. However, for SS-OCT commercial wavelength-swept sources and data-acquisition boards with high sampling rates, on the order of 108–109 per second, are still very expensive. In SD-OCT, the acquisition speed can be increased up to 312 kHz by using a subset of the total number of camera pixels [16]. In addition, the acquisition speed of SD-OCT can be made to achieve a line rate of 500 kHz by using interlaced detection with two spectrometers and selecting only 800 out of 4,096 pixels in the camera, to increase the A-line rate [17]. However, SD-OCT has trade-offs among imaging depth range, sensitivity roll-off, axial resolution, and acquisition speed. SD-OCT has to sacrifice spectral resolution by using some of the camera pixels in the spectrometer to increase the acquisition speed. Consequently, the imaging-depth range is limited to below 2 mm in air, and the sensitivity roll-off decays rapidly. Further, SD-OCT cannot preserve axial resolutions below 10 μm in air to maintain long imaging-depth ranges over 2 mm, when the number of pixels in the region of interest (ROI) in the camera is reduced to facilitate high acquisition speeds [16, 17].
The axial resolution of OCT is inversely proportional to the full width at half maximum (FWHM) of the light source. Since UHR-OCT with 1-μm axial resolution by using an ultrashort femtosecond laser with FWHM of 260 nm at 800 nm was first introduced by Drexler
In this study, we demonstrate UHR SD-OCT with an acquisition speed (line rate) of 200 kHz. To achieve a 200-kHz line rate we use 1,152 pixels, a subset of the overall 4,096 pixels in the camera at 70 kHz line rate. A wide-band SLD combining two SLD modules is used for ultrahigh axial resolution. In addition, partial spectrum detection is used to obtain OCT images within an imaging depth of 2.1 mm, while maintaining ultrahigh axial resolution. Our SLD has the spectrum of a flat-topped intensity profile, resulting in the appearance of side lobes. Consequently, we apply the super-Gaussian function, which has been used to estimate the flat-topped intensity profile of laser beams in the field of optics [23, 24], and in the design of finite-impulse-response (FIR) filters in digital signal processing [25], as a new window function. We then calculate the frequency response of the super-Gaussian window function and compare the result to those of other popular window functions after application to partial spectrum detection.
A schematic of the SD-OCT system based on a linear wavenumber-domain (
Spectral data from the spectrometer are digitized using a frame grabber (PCIe-1433; National Instruments Corp., TX, USA). The digitized spectral data are then processed using a quad-core central processing unit (CPU) and a graphic processing unit (GPU) to accelerate numerical calculations and display real-time two-dimensional images. We develop the software in Microsoft Visual C++ with NVIDIA’s compute unified device architecture (CUDA10.0) technology [28, 29].
Figures 2(a)–2(c) show the normalized spectrum of the SLD according to the sampling number. The original spectrum is acquired with 10,001 sampling points using an optical spectrum analyzer (AQ6317B; Ando Corp., CA, USA). The acquired original spectrum is then resampled with 2,048, 1,152, and 1,024 sampling points and converted to wavenumber (
The frequency response (or frequency spectrum) of a truncation window should ideally be a frequency-domain impulse, which should have a very narrow main lobe and no side lobes. However, in practice, windows with narrow main lobes tend to have large side lobes, and vice versa [30]. Large side lobes can obscure the weaker frequency peak after FFT, when the waveform comprises two adjacently frequencies. The Hann window, Hamming window, and Gaussian window are commonly used to reduce such side lobes. The Hann window and Hamming window are defined from generalized Hamming windows as follows [30]:
when
The graphs of the window functions plus the frequency response of each window function are shown in Fig. 3. In that figure, the rectangular window function is
The super-Gaussian window function is expanded from the Gaussian window function, and is defined mathematically as [23–25]
In the super-Gaussian window function,
Figures 5(a) and 5(b) are the results obtained for the simulated effects of the window functions, using the spectrum with 1,152 sampling points in Fig. 2(b). In applying the Gaussian window function, we set the value of
To compare the effects of the window functions in our system, we use a 1-mm slide glass as a sample. The mirror is positioned approximately 870 μm from zero optical-path difference (OPD). Figures 5(c) and 5(d) are the PSFs of the measured axial resolution from the slide glass. We measure the axial resolutions at 5.5, 4.8, and 4.2 μm in air after applying the Hann, Gaussian, and super-Gaussian window functions respectively, as shown in Fig. 5(c). These values correspond respectively to 4.1, 3.6, and 3.1 μm in tissue (
Figure 6 shows UHR FD/SD-OCT images of human finger skin after applying the Hann, Gaussian, and super-Gaussian window functions. The results of the experiments do not show large differences in the side lobes between window functions, as shown in Fig. 4(d), although the differences in the simulated results are clear. However, because OCT images, like most, are displayed with log-scaled intensity (or color map), small side lobes appear in the OCT image. As shown in Fig. 6(a), the edge of the skin surface is sharp, but side lobes are clearly displayed. In contrast, the edge of the skin surface in Figs. 6(b) and 6(c), to which the Hann and Gaussian window functions have been applied, are a bit thicker than that in Fig. 6(a); however, the side lobes have disappeared. Figure 6(d) shows the OCT image after applying the super-Gaussian window function. Here the edge of the skin surface is thicker than that in Fig. 6(a), but thinner than those in Figs. 6(b) and 6(c). The side lobes in Fig. 6(d) are weakly visible.
Figure 7 shows cross-sectional OCT images of the human retina. Whereas Fig. 6 compared images to which window functions multipliers were applied in the interface between air and tissue, Fig. 7 shows the differences in the inner layers of the retina. As shown in the red area of Fig. 7(a), the interfaces between photoreceptor inner-segment/outer-segment junction (IS/OS, upper blue arrow), photoreceptor outer segments (PR OS, middle blue arrow), and retinal pigmentation epithelium (RPE, lower blue arrow) are ambiguous due to the effect of side lobes, compared to those in Figs. 7(b)–7(d). The side lobes appear in the IS/OS and PR OS layers in a similar fashion to the blue boxed area of Fig. 7(a). In Figs. 7(c) and 7(d), to which the Gaussian and super-Gaussian window functions have been applied, the IS/OS, PR OS, and RPE layers are clearly distinguished. In addition, the layers in Fig. 7(d) are sharper than those in Fig. 7(c). A windowing process causes some power loss for the overall OCT signal, as shown in Fig. 3(a). However, in this study we have assumed that the power loss after the windowing process would not make a significant difference to the OCT images, because the OCT signals were represented as images with log scale or exponential scale. In Figs. 6 and 7, as assumed, no significant differences are seen between OCT images according to their window functions. To obtain Figs. 6 and 7, the fast-axis galvanometer is scanned using a sawtooth signal with 80% duty cycle. Consequently, we obtain a skin image with an acquisition time of 6.25 ms (160 fps), and a retina image with an acquisition time of 9.4 ms (106.7 fps), by using multithread CPU processing and parallel GPU computation processing.
The super-Gaussian window function is an expanded Gaussian window function, and has the advantage of its width and slope being adjustable. In both simulation and experiment, although the super-Gaussian window function does not significantly enhance the axial resolution, the axial resolution at the PSF following application of the super-Gaussian window function is closer to that at the PSF without the window function applied than is the case with the Hann or Gaussian window function. In addition, the super-Gaussian window function has the effect of reducing the side lobes. The window function should be used while considering factors such as spectrum shape and bandwidth of the light source. Even if the super-Gaussian window function is not always used for all light sources, for spectra with flat-topped intensity profiles it is a good function to help reduce side lobes and obtain results close to the theoretical axial resolution. In this study, the width of the window
We have demonstrated UHR SD-OCT at 200-kHz line rate, using a wideband SLD of 100 nm at 849 nm and a subset of the total number of camera pixels. In addition, partial spectrum detection was used to obtain OCT images within an imaging depth of 2.1 mm while maintaining ultrahigh axial resolution. The full spectrum of the SLD used in this study and the partially detected spectrum had flat-topped intensity profiles. These intensity profiles resulted in the occurrence of side lobes after FFT. Consequently, we proposed and applied the super-Gaussian function as a new window function to reduce the side lobes and obtain results that were closer to that of the axial resolution when no window function was applied. The side lobes at PSF following application of the super-Gaussian window function were higher than those at PSF following application of the Hann or Gaussian window function, but lower than those at PSF with no window function applied. In addition, the application of the super-Gaussian window function gave results close to the ultrahigh axial resolution of 4.2 μm in air, corresponding to 3.1 μm in tissue (
The authors declare no conflicts of interest.
Data underlying the results presented in this paper are not publicly available at the time of publication, but may be obtained from the authors upon reasonable request.
Development of Measurement Standards and Technology for Biomaterials and Medical Convergence, funded by the Korea Research Institute of Standards and Science (KRISS-GP2022-0006); Creative Materials Discovery Program (2018M3D1A1058814); Korea Medical Device Development Fund grants, funded by the Korean government (Ministry of Science and ICT, Ministry of Trade, Industry and Energy, Ministry of Health & Welfare, Ministry of Food and Drug Safety) (Project Number: KMDF_PR_20200901_0024 and KMDF_PR_20200901 _0026).
Curr. Opt. Photon. 2023; 7(1): 73-82
Published online February 25, 2023 https://doi.org/10.3807/COPP.2023.7.1.73
Copyright © Optical Society of Korea.
Hyun-Ji Lee1,2, Sang-Won Lee1,2
1Safety Measurement Institute, Korea Research Institute of Standards and Science, Daejeon 34113, Korea
2Department of Medical Physics, Korea University of Science and Technology, Daejeon 34113, Korea
Correspondence to:*swlee76@kriss.re.kr, ORCID 0000-0001-6952-6957
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
In this study, we demonstrate ultrahigh-resolution spectral-domain optical coherence tomography with a 200-kHz line rate using a superluminescent diode with a−3-dB bandwidth of 100 nm at 849 nm. To increase the line rate, a subset of the total number of camera pixels is used. In addition, a partial-spectrum detection method is used to obtain OCT images within an imaging depth of 2.1 mm while maintaining ultrahigh axial resolution. The partially detected spectrum has a flat-topped intensity profile, and side lobes occur after fast Fourier transformation. Consequently, we propose and apply the super-Gaussian window function as a new window function, to reduce the side lobes and obtain a result that is close to that of the axial-resolution condition with no window function applied. Upon application of the super-Gaussian window function, the result is close to the ultrahigh axial resolution of 4.2 μm in air, corresponding to 3.1 μm in tissue (n = 1.35).
Keywords: Spectral domain, Super-Gaussian window, Ultrahigh resolution optical coherence tomography
Optical coherence tomography (OCT) has been extensively studied as a clinical and noninvasive imaging tool for biological tissues, because it provides high-resolution cross-sectional and three-dimensional volumetric images [1, 2]. Many OCT study groups have spent significant effort on trying to obtain higher axial resolutions, higher sensitivities, and increased acquisition speeds in various fields, including medical application studies [3–13]. Ultrahigh-resolution OCT (UHR-OCT) with an axial resolution of 3 μm or less can yield clear visualization of microstructured layers in tissues, close to the level of histology. The higher acquisition speed can minimize motion artifacts and facilitate quantitative analysis of three- and four-dimensional image data. Recently, Fourier-domain OCT (FD-OCT)—one type based on a wavelength-swept source (SS-OCT), and another on a spectral domain (SD-OCT)—has been actively used in high-sensitivity and high-acquisition-speed applications [9–11]. SS-OCT can provide an increased imaging depth of over 5 mm and a lower sensitivity roll-off. The acquisition speed of SS-OCT has increased substantially to line rates of a few hundred kilohertz and even up to a few megahertz, since wavelength-swept sources based on Fourier-domain mode locking (FDML) and high-speed polygon scanners were introduced [12–15]. A wavelength-swept source with 100–200 kHz line rate has recently been commercialized [2]. However, for SS-OCT commercial wavelength-swept sources and data-acquisition boards with high sampling rates, on the order of 108–109 per second, are still very expensive. In SD-OCT, the acquisition speed can be increased up to 312 kHz by using a subset of the total number of camera pixels [16]. In addition, the acquisition speed of SD-OCT can be made to achieve a line rate of 500 kHz by using interlaced detection with two spectrometers and selecting only 800 out of 4,096 pixels in the camera, to increase the A-line rate [17]. However, SD-OCT has trade-offs among imaging depth range, sensitivity roll-off, axial resolution, and acquisition speed. SD-OCT has to sacrifice spectral resolution by using some of the camera pixels in the spectrometer to increase the acquisition speed. Consequently, the imaging-depth range is limited to below 2 mm in air, and the sensitivity roll-off decays rapidly. Further, SD-OCT cannot preserve axial resolutions below 10 μm in air to maintain long imaging-depth ranges over 2 mm, when the number of pixels in the region of interest (ROI) in the camera is reduced to facilitate high acquisition speeds [16, 17].
The axial resolution of OCT is inversely proportional to the full width at half maximum (FWHM) of the light source. Since UHR-OCT with 1-μm axial resolution by using an ultrashort femtosecond laser with FWHM of 260 nm at 800 nm was first introduced by Drexler
In this study, we demonstrate UHR SD-OCT with an acquisition speed (line rate) of 200 kHz. To achieve a 200-kHz line rate we use 1,152 pixels, a subset of the overall 4,096 pixels in the camera at 70 kHz line rate. A wide-band SLD combining two SLD modules is used for ultrahigh axial resolution. In addition, partial spectrum detection is used to obtain OCT images within an imaging depth of 2.1 mm, while maintaining ultrahigh axial resolution. Our SLD has the spectrum of a flat-topped intensity profile, resulting in the appearance of side lobes. Consequently, we apply the super-Gaussian function, which has been used to estimate the flat-topped intensity profile of laser beams in the field of optics [23, 24], and in the design of finite-impulse-response (FIR) filters in digital signal processing [25], as a new window function. We then calculate the frequency response of the super-Gaussian window function and compare the result to those of other popular window functions after application to partial spectrum detection.
A schematic of the SD-OCT system based on a linear wavenumber-domain (
Spectral data from the spectrometer are digitized using a frame grabber (PCIe-1433; National Instruments Corp., TX, USA). The digitized spectral data are then processed using a quad-core central processing unit (CPU) and a graphic processing unit (GPU) to accelerate numerical calculations and display real-time two-dimensional images. We develop the software in Microsoft Visual C++ with NVIDIA’s compute unified device architecture (CUDA10.0) technology [28, 29].
Figures 2(a)–2(c) show the normalized spectrum of the SLD according to the sampling number. The original spectrum is acquired with 10,001 sampling points using an optical spectrum analyzer (AQ6317B; Ando Corp., CA, USA). The acquired original spectrum is then resampled with 2,048, 1,152, and 1,024 sampling points and converted to wavenumber (
The frequency response (or frequency spectrum) of a truncation window should ideally be a frequency-domain impulse, which should have a very narrow main lobe and no side lobes. However, in practice, windows with narrow main lobes tend to have large side lobes, and vice versa [30]. Large side lobes can obscure the weaker frequency peak after FFT, when the waveform comprises two adjacently frequencies. The Hann window, Hamming window, and Gaussian window are commonly used to reduce such side lobes. The Hann window and Hamming window are defined from generalized Hamming windows as follows [30]:
when
The graphs of the window functions plus the frequency response of each window function are shown in Fig. 3. In that figure, the rectangular window function is
The super-Gaussian window function is expanded from the Gaussian window function, and is defined mathematically as [23–25]
In the super-Gaussian window function,
Figures 5(a) and 5(b) are the results obtained for the simulated effects of the window functions, using the spectrum with 1,152 sampling points in Fig. 2(b). In applying the Gaussian window function, we set the value of
To compare the effects of the window functions in our system, we use a 1-mm slide glass as a sample. The mirror is positioned approximately 870 μm from zero optical-path difference (OPD). Figures 5(c) and 5(d) are the PSFs of the measured axial resolution from the slide glass. We measure the axial resolutions at 5.5, 4.8, and 4.2 μm in air after applying the Hann, Gaussian, and super-Gaussian window functions respectively, as shown in Fig. 5(c). These values correspond respectively to 4.1, 3.6, and 3.1 μm in tissue (
Figure 6 shows UHR FD/SD-OCT images of human finger skin after applying the Hann, Gaussian, and super-Gaussian window functions. The results of the experiments do not show large differences in the side lobes between window functions, as shown in Fig. 4(d), although the differences in the simulated results are clear. However, because OCT images, like most, are displayed with log-scaled intensity (or color map), small side lobes appear in the OCT image. As shown in Fig. 6(a), the edge of the skin surface is sharp, but side lobes are clearly displayed. In contrast, the edge of the skin surface in Figs. 6(b) and 6(c), to which the Hann and Gaussian window functions have been applied, are a bit thicker than that in Fig. 6(a); however, the side lobes have disappeared. Figure 6(d) shows the OCT image after applying the super-Gaussian window function. Here the edge of the skin surface is thicker than that in Fig. 6(a), but thinner than those in Figs. 6(b) and 6(c). The side lobes in Fig. 6(d) are weakly visible.
Figure 7 shows cross-sectional OCT images of the human retina. Whereas Fig. 6 compared images to which window functions multipliers were applied in the interface between air and tissue, Fig. 7 shows the differences in the inner layers of the retina. As shown in the red area of Fig. 7(a), the interfaces between photoreceptor inner-segment/outer-segment junction (IS/OS, upper blue arrow), photoreceptor outer segments (PR OS, middle blue arrow), and retinal pigmentation epithelium (RPE, lower blue arrow) are ambiguous due to the effect of side lobes, compared to those in Figs. 7(b)–7(d). The side lobes appear in the IS/OS and PR OS layers in a similar fashion to the blue boxed area of Fig. 7(a). In Figs. 7(c) and 7(d), to which the Gaussian and super-Gaussian window functions have been applied, the IS/OS, PR OS, and RPE layers are clearly distinguished. In addition, the layers in Fig. 7(d) are sharper than those in Fig. 7(c). A windowing process causes some power loss for the overall OCT signal, as shown in Fig. 3(a). However, in this study we have assumed that the power loss after the windowing process would not make a significant difference to the OCT images, because the OCT signals were represented as images with log scale or exponential scale. In Figs. 6 and 7, as assumed, no significant differences are seen between OCT images according to their window functions. To obtain Figs. 6 and 7, the fast-axis galvanometer is scanned using a sawtooth signal with 80% duty cycle. Consequently, we obtain a skin image with an acquisition time of 6.25 ms (160 fps), and a retina image with an acquisition time of 9.4 ms (106.7 fps), by using multithread CPU processing and parallel GPU computation processing.
The super-Gaussian window function is an expanded Gaussian window function, and has the advantage of its width and slope being adjustable. In both simulation and experiment, although the super-Gaussian window function does not significantly enhance the axial resolution, the axial resolution at the PSF following application of the super-Gaussian window function is closer to that at the PSF without the window function applied than is the case with the Hann or Gaussian window function. In addition, the super-Gaussian window function has the effect of reducing the side lobes. The window function should be used while considering factors such as spectrum shape and bandwidth of the light source. Even if the super-Gaussian window function is not always used for all light sources, for spectra with flat-topped intensity profiles it is a good function to help reduce side lobes and obtain results close to the theoretical axial resolution. In this study, the width of the window
We have demonstrated UHR SD-OCT at 200-kHz line rate, using a wideband SLD of 100 nm at 849 nm and a subset of the total number of camera pixels. In addition, partial spectrum detection was used to obtain OCT images within an imaging depth of 2.1 mm while maintaining ultrahigh axial resolution. The full spectrum of the SLD used in this study and the partially detected spectrum had flat-topped intensity profiles. These intensity profiles resulted in the occurrence of side lobes after FFT. Consequently, we proposed and applied the super-Gaussian function as a new window function to reduce the side lobes and obtain results that were closer to that of the axial resolution when no window function was applied. The side lobes at PSF following application of the super-Gaussian window function were higher than those at PSF following application of the Hann or Gaussian window function, but lower than those at PSF with no window function applied. In addition, the application of the super-Gaussian window function gave results close to the ultrahigh axial resolution of 4.2 μm in air, corresponding to 3.1 μm in tissue (
The authors declare no conflicts of interest.
Data underlying the results presented in this paper are not publicly available at the time of publication, but may be obtained from the authors upon reasonable request.
Development of Measurement Standards and Technology for Biomaterials and Medical Convergence, funded by the Korea Research Institute of Standards and Science (KRISS-GP2022-0006); Creative Materials Discovery Program (2018M3D1A1058814); Korea Medical Device Development Fund grants, funded by the Korean government (Ministry of Science and ICT, Ministry of Trade, Industry and Energy, Ministry of Health & Welfare, Ministry of Food and Drug Safety) (Project Number: KMDF_PR_20200901_0024 and KMDF_PR_20200901 _0026).